Neelix is apparently a journalist now, and he is investigating all the weird stuff going on, as both the Paris-is-a-malcontent and the Jonas-is-a-tratior running subplots come to a head in a most unsatisfying manner. The Star Trek: Voyager Rewatch does some “Investigations.”
Chakotay’s authority as first officer is completely undermined, as two of his subordinates are engaged in a covert mission behind his back, with the full support of his captain. And it makes no sense for it to be Paris who does this anyhow. Think about this for a second. One the one hand, you’ve got a Starfleet commander who left Starfleet of his own accord and became a talented enough Maquis cell leader that an entire ship was sent just after him. On the other hand, you’ve got a Starfleet washout whose history involves getting people killed and getting his sorry ass caught and imprisoned.
Which of those two do you think would make a better stalking horse for the spy on board? I’ll give you a hint: he has a tattoo on his face. But, once again, the show is far too invested in making sure that the white guy gets to do all the cool stuff.